I made a little launcher for my server, on first run it will detect the installation folder and will download and install all the mod files on the server. Subsequent lunches, it will check to see if there has been a new mod bundle installed, and if so, download it. Once the mods are synced, it launches the game and connects to the server.
This is was made to basically streamline the installation process, players simply download the launcher and then just hit a button to automatically download/update/sync all mods and launch the game, no messing around with any config files etc.
If anyone feels they would have any use for such a tool for their own servers, I am happy to open it up to other server owners to be able to configure it for their own servers and host it themselves.